#!/usr/local2/bin/python2.3

import os, sys
from openeye.oechem import *

# Just run ionizer
os.system('sdconvert -st -isd b9.4_thio_parts_connect_2_ln_corina.sdf -omae b9.4_thio_parts_connect_2_ln_corina.mae')
os.system('ionizer -i 2 -ph 7 -s ~joha/PETC/PYTHON/DB/ionizer_tiSHO_exclude.ini -i b9.4_thio_parts_connect_2_ln_corina.mae -l b9.5_thio_parts_connect_2_ln_corina_ionizer.log -b b9.5_thio_parts_connect_2_ln_corina_ionizer_bad.mae -o b9.5_thio_parts_connect_2_ln_corina_ionizer.mae')
os.system('sdconvert -imae b9.5_thio_parts_connect_2_ln_corina_ionizer.mae -osd b9.5_thio_parts_connect_2_ln_corina_ionizer.sdf')